J3_7BGE_006
3D structure
- PDB id
- 7BGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7BGE_006 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.1449
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7BGE|1|a|C|1075
7BGE|1|a|G|1076
7BGE|1|a|U|1077
7BGE|1|a|C|1078
7BGE|1|a|A|1079
7BGE|1|a|G|1080
*
7BGE|1|a|C|1119
7BGE|1|a|G|1120
7BGE|1|a|C|1121
7BGE|1|a|A|1122
7BGE|1|a|A|1123
7BGE|1|a|C|1124
7BGE|1|a|C|1125
*
7BGE|1|a|G|1198
7BGE|1|a|A|1199
7BGE|1|a|U|1200
7BGE|1|a|G|1201
7BGE|1|a|A|1202
7BGE|1|a|C|1203
7BGE|1|a|G|1204
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain c
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
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