J3_7BGE_011

3D structure

PDB id

7BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

7BGE|1|a|U|1223, 7BGE|1|a|U|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BGE_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.2039

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

7BGE|1|a|C|1000
7BGE|1|a|U|1001
7BGE|1|a|U|1002
7BGE|1|a|G|1003
7BGE|1|a|A|1004
7BGE|1|a|C|1005
7BGE|1|a|A|1006
7BGE|1|a|U|1007
*
7BGE|1|a|A|1056
7BGE|1|a|C|1057
7BGE|1|a|A|1058
7BGE|1|a|G|1059
*
7BGE|1|a|C|1221
7BGE|1|a|U|1222
7BGE|1|a|U|1223
7BGE|1|a|A|1224
7BGE|1|a|U|1225
7BGE|1|a|G|1226

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z