J3_7BHP_001

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

7BHP|1|L5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BHP|1|L5|C|112
7BHP|1|L5|A|113
7BHP|1|L5|G|114
7BHP|1|L5|C|115
7BHP|1|L5|G|116
*
7BHP|1|L5|C|155
7BHP|1|L5|G|156
7BHP|1|L5|U|157
7BHP|1|L5|A|158
7BHP|1|L5|C|159
7BHP|1|L5|G|160
*
7BHP|1|L5|C|275
7BHP|1|L5|C|276
7BHP|1|L5|G|277
7BHP|1|L5|G|278

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36