J3_7BHP_007

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

7BHP|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BHP_007 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0989

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7BHP|1|L5|C|2393
7BHP|1|L5|G|2394
7BHP|1|L5|A|2395
7BHP|1|L5|A|2396
7BHP|1|L5|G|2397
7BHP|1|L5|U|2398
7BHP|1|L5|G|2399
*
7BHP|1|L5|C|2805
7BHP|1|L5|A|2806
7BHP|1|L5|A|2807
*
7BHP|1|L5|U|2819
7BHP|1|L5|C|2820
7BHP|1|L5|U|2821
7BHP|1|L5|G|2822

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34