J3_7BHP_026

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

7BHP|1|L5|U|4882, 7BHP|1|L5|C|4937, 7BHP|1|L5|A|4938, 7BHP|1|L5|C|4939, 7BHP|1|L5|C|4940, 7BHP|1|L5|A|4943, 7BHP|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BHP|1|L5|G|4751
7BHP|1|L5|U|4752
7BHP|1|L5|U|4753
7BHP|1|L5|G|4754
*
7BHP|1|L5|C|4879
7BHP|1|L5|C|4880
7BHP|1|L5|U|4881
7BHP|1|L5|U|4882
7BHP|1|L5|C|4883
*
7BHP|1|L5|G|4936
7BHP|1|L5|C|4937
7BHP|1|L5|A|4938
7BHP|1|L5|C|4939
7BHP|1|L5|C|4940
7BHP|1|L5|G|4941
7BHP|1|L5|C|4942
7BHP|1|L5|A|4943
7BHP|1|L5|C|4944
7BHP|1|L5|G|4945
7BHP|1|L5|U|4946
7BHP|1|L5|U|4947
7BHP|1|L5|C|4948

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a