J3_7BOG_004

3D structure

PDB id

7BOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state E (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7BOG|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BOG_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0522

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7BOG|1|A|C|826
7BOG|1|A|U|827
7BOG|1|A|U|828
7BOG|1|A|G|829
*
7BOG|1|A|C|857
7BOG|1|A|G|858
7BOG|1|A|G|859
7BOG|1|A|A|860
7BOG|1|A|G|861
*
7BOG|1|A|C|868
7BOG|1|A|G|869
7BOG|1|A|U|870
7BOG|1|A|U|871
7BOG|1|A|A|872
7BOG|1|A|A|873
7BOG|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S8