J3_7BOH_004

3D structure

PDB id

7BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7BOH|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BOH_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0522

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7BOH|1|A|C|826
7BOH|1|A|U|827
7BOH|1|A|U|828
7BOH|1|A|G|829
*
7BOH|1|A|C|857
7BOH|1|A|G|858
7BOH|1|A|G|859
7BOH|1|A|A|860
7BOH|1|A|G|861
*
7BOH|1|A|C|868
7BOH|1|A|G|869
7BOH|1|A|U|870
7BOH|1|A|U|871
7BOH|1|A|A|872
7BOH|1|A|A|873
7BOH|1|A|G|874

Current chains

Chain A

RNA (1527-MER)

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8