J3_7BT6_001

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

AUGAAAAG*CG*CU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BT6_001 not in the Motif Atlas

Homologous match to J3_5TBW_002

Geometric discrepancy: 0.0971

The information below is about J3_5TBW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

7BT6|1|1|A|369
7BT6|1|1|U|370
7BT6|1|1|G|371
7BT6|1|1|A|372
7BT6|1|1|A|373
7BT6|1|1|A|374
7BT6|1|1|A|375
7BT6|1|1|G|376
*
7BT6|1|1|C|403
7BT6|1|1|G|404
*
7BT6|1|2|C|19
7BT6|1|2|U|20

Current chains

Chain 1

RDN25-1 rRNA

Chain 2

RDN5.8-1 rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A