J3_7BT6_015
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 7BT6|1|1|A|398, 7BT6|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7BT6_015 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.1096
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7BT6|1|1|A|369
7BT6|1|1|U|370
7BT6|1|1|G|371
7BT6|1|1|A|372
7BT6|1|1|A|373
7BT6|1|1|A|374
7BT6|1|1|A|375
7BT6|1|1|G|376
7BT6|1|1|A|377
7BT6|1|1|A|378
7BT6|1|1|C|379
*
7BT6|1|1|G|390
7BT6|1|1|A|391
7BT6|1|1|G|392
7BT6|1|1|U|393
7BT6|1|1|G|394
7BT6|1|1|A|395
7BT6|1|1|A|396
7BT6|1|1|A|397
7BT6|1|1|A|398
7BT6|1|1|A|399
7BT6|1|1|G|400
7BT6|1|1|U|401
7BT6|1|1|A|402
7BT6|1|1|C|403
7BT6|1|1|G|404
*
7BT6|1|2|C|19
7BT6|1|2|U|20
Current chains
- Chain 1
- RDN25-1 rRNA
- Chain 2
- RDN5.8-1 rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
Coloring options: