J3_7BT6_018

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

UU*AGAAGU*ACAUUUGA

Length

16 nucleotides

Bulged bases

7BT6|1|1|A|1065, 7BT6|1|1|U|1094, 7BT6|1|1|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BT6_018 not in the Motif Atlas

Geometric match to J3_5TBW_063

Geometric discrepancy: 0.2764

The information below is about J3_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11066.2

Basepair signature

cWW-cWW-cSS-F-cWW-F-F-cWW-F

Number of instances in this motif group

3

Unit IDs

7BT6|1|1|U|986
7BT6|1|1|U|987
*
7BT6|1|1|A|1062
7BT6|1|1|G|1063
7BT6|1|1|A|1064
7BT6|1|1|A|1065
7BT6|1|1|G|1066
7BT6|1|1|U|1067
*
7BT6|1|1|A|1091
7BT6|1|1|C|1092
7BT6|1|1|A|1093
7BT6|1|1|U|1094
7BT6|1|1|U|1095
7BT6|1|1|U|1096
7BT6|1|1|G|1097
7BT6|1|1|A|1098

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain T

60S ribosomal protein L21-A