J3_7BTB_004
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 7BTB|1|1|A|817, 7BTB|1|1|G|924, 7BTB|1|1|A|925
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7BTB_004 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.3582
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7BTB|1|1|U|814
7BTB|1|1|G|815
7BTB|1|1|A|816
7BTB|1|1|A|817
7BTB|1|1|C|818
7BTB|1|1|U|819
7BTB|1|1|A|820
*
7BTB|1|1|U|905
7BTB|1|1|A|906
7BTB|1|1|G|907
*
7BTB|1|1|C|923
7BTB|1|1|G|924
7BTB|1|1|A|925
7BTB|1|1|A|926
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain N
- 60S ribosomal protein L15-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: