J3_7BTB_012
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 7BTB|1|1|A|2887, 7BTB|1|1|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7BTB_012 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.1033
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7BTB|1|1|U|2886
7BTB|1|1|A|2887
7BTB|1|1|U|2888
7BTB|1|1|C|2889
*
7BTB|1|1|G|2914
7BTB|1|1|U|2915
7BTB|1|1|U|2916
*
7BTB|1|1|A|2930
7BTB|1|1|C|2931
7BTB|1|1|U|2932
7BTB|1|1|A|2933
7BTB|1|1|A|2934
7BTB|1|1|U|2935
7BTB|1|1|A|2936
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain V
- 60S ribosomal protein L23-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain z
- UPF0642 protein YBL028C
Coloring options: