J3_7BV8_005

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BV8_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1099

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7BV8|1|A|C|1298
7BV8|1|A|G|1299
7BV8|1|A|G|1300
7BV8|1|A|A|1301
7BV8|1|A|A|1302
7BV8|1|A|G|1303
*
7BV8|1|A|C|1625
7BV8|1|A|A|1626
7BV8|1|A|G|1627
*
7BV8|1|A|C|1639
7BV8|1|A|A|1640
7BV8|1|A|A|1641
7BV8|1|A|G|1642

Current chains

Chain A

23S rRNA

Nearby chains