J3_7CPJ_006

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7CPJ|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7CPJ_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1189

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7CPJ|1|A|C|1306
7CPJ|1|A|A|1307
7CPJ|1|A|A|1308
7CPJ|1|A|G|1309
*
7CPJ|1|A|C|1605
7CPJ|1|A|C|1606
7CPJ|1|A|C|1607
7CPJ|1|A|A|1608
7CPJ|1|A|A|1609
7CPJ|1|A|A|1610
7CPJ|1|A|C|1611
*
7CPJ|1|A|G|1620
7CPJ|1|A|U|1621
7CPJ|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34