3D structure

PDB id
7CPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
ycbZ-stalled 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
7CPJ|1|a|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7CPJ_017 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.096
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

7CPJ|1|a|C|826
7CPJ|1|a|U|827
7CPJ|1|a|U|828
7CPJ|1|a|G|829
*
7CPJ|1|a|C|857
7CPJ|1|a|G|858
7CPJ|1|a|G|859
7CPJ|1|a|A|860
7CPJ|1|a|G|861
*
7CPJ|1|a|C|868
7CPJ|1|a|G|869
7CPJ|1|a|U|870
7CPJ|1|a|U|871
7CPJ|1|a|A|872
7CPJ|1|a|A|873
7CPJ|1|a|G|874

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain h
30S ribosomal protein S8
Chain u
30S ribosomal protein S21

Coloring options:


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