J3_7CPU_013

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7CPU_013 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1409

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7CPU|1|L5|C|3594
7CPU|1|L5|G|3595
7CPU|1|L5|G|3596
*
7CPU|1|L5|C|3725
7CPU|1|L5|U|3726
7CPU|1|L5|G|3727
7CPU|1|L5|A|3728
7CPU|1|L5|C|3729
*
7CPU|1|L5|G|3821
7CPU|1|L5|G|3822
7CPU|1|L5|A|3823
7CPU|1|L5|C|3824
7CPU|1|L5|A|3825
7CPU|1|L5|G|3826

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15