J3_7CPU_014
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 7CPU|1|L5|C|3990, 7CPU|1|L5|U|4027
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPU_014 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0703
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7CPU|1|L5|G|3881
7CPU|1|L5|U|3882
7CPU|1|L5|C|3883
*
7CPU|1|L5|G|3984
7CPU|1|L5|C|3985
7CPU|1|L5|C|3986
7CPU|1|L5|U|3987
7CPU|1|L5|C|3988
7CPU|1|L5|A|3989
7CPU|1|L5|C|3990
7CPU|1|L5|G|3991
7CPU|1|L5|A|3992
7CPU|1|L5|U|3993
7CPU|1|L5|C|3994
7CPU|1|L5|C|3995
*
7CPU|1|L5|G|4023
7CPU|1|L5|G|4024
7CPU|1|L5|U|4025
7CPU|1|L5|G|4026
7CPU|1|L5|U|4027
7CPU|1|L5|C|4028
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lo
- 60S ribosomal protein L36a
- Chain S6
- Transfer RNA; tRNA
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