J3_7CPU_035
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 7CPU|1|L5|G|408, 7CPU|1|L5|G|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPU_035 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.2767
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7CPU|1|L5|U|379
7CPU|1|L5|U|380
7CPU|1|L5|G|381
7CPU|1|L5|A|382
7CPU|1|L5|A|383
7CPU|1|L5|A|384
7CPU|1|L5|A|385
7CPU|1|L5|G|386
7CPU|1|L5|A|387
7CPU|1|L5|A|388
7CPU|1|L5|C|389
*
7CPU|1|L5|G|400
7CPU|1|L5|A|401
7CPU|1|L5|G|402
7CPU|1|L5|U|403
7CPU|1|L5|U|404
7CPU|1|L5|C|405
7CPU|1|L5|A|406
7CPU|1|L5|A|407
7CPU|1|L5|G|408
7CPU|1|L5|A|409
7CPU|1|L5|G|410
7CPU|1|L5|G|411
7CPU|1|L5|G|412
7CPU|1|L5|C|413
7CPU|1|L5|G|414
*
7CPU|1|L8|C|19
7CPU|1|L8|A|20
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
- Chain L8
- Mus musculus 5.8S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- 60S ribosomal protein L39
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