J3_7CPU_046
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPU_046 not in the Motif Atlas
- Homologous match to J3_8P9A_073
- Geometric discrepancy: 0.4005
- The information below is about J3_8P9A_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.2
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7CPU|1|S2|A|817
7CPU|1|S2|G|818
7CPU|1|S2|A|819
7CPU|1|S2|G|820
*
7CPU|1|S2|C|830
7CPU|1|S2|A|831
7CPU|1|S2|G|832
*
7CPU|1|S2|C|844
7CPU|1|S2|U|845
7CPU|1|S2|G|846
7CPU|1|S2|G|847
7CPU|1|S2|A|848
7CPU|1|S2|U|849
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: