J3_7CPV_015
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 7CPV|1|L5|A|4117, 7CPV|1|L5|U|4118
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPV_015 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0924
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7CPV|1|L5|U|4116
7CPV|1|L5|A|4117
7CPV|1|L5|U|4118
7CPV|1|L5|C|4119
*
7CPV|1|L5|G|4144
7CPV|1|L5|U|4145
7CPV|1|L5|U|4146
*
7CPV|1|L5|A|4160
7CPV|1|L5|C|4161
7CPV|1|L5|U|4162
7CPV|1|L5|A|4163
7CPV|1|L5|A|4164
7CPV|1|L5|U|4165
7CPV|1|L5|A|4166
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LO
- 60S ribosomal protein L13a
- Chain LV
- 60S ribosomal protein L23
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