J3_7CPV_018
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 7CPV|1|L8|A|62, 7CPV|1|L8|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPV_018 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1703
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
7CPV|1|L8|A|44
7CPV|1|L8|C|45
*
7CPV|1|L8|G|58
7CPV|1|L8|A|59
7CPV|1|L8|G|60
7CPV|1|L8|A|61
7CPV|1|L8|A|62
7CPV|1|L8|U|63
7CPV|1|L8|U|64
*
7CPV|1|L8|A|95
7CPV|1|L8|C|96
7CPV|1|L8|A|97
7CPV|1|L8|C|98
7CPV|1|L8|U|99
Current chains
- Chain L8
- Mus musculus 5.8S ribosomal RNA
Nearby chains
- Chain LX
- 60S ribosomal protein L23a
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- Ribosomal protein L39-like
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