J3_7D5S_004

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7D5S_004 not in the Motif Atlas

Homologous match to J3_4V88_036

Geometric discrepancy: 0.2743

The information below is about J3_4V88_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.2

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7D5S|1|SA|U|1168
7D5S|1|SA|G|1169
7D5S|1|SA|G|1170
7D5S|1|SA|A|1171
*
7D5S|1|SA|U|1468
7D5S|1|SA|A|1469
7D5S|1|SA|C|1470
*
7D5S|1|SA|G|1574
7D5S|1|SA|G|1575
7D5S|1|SA|A|1576
7D5S|1|SA|A|1577

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5G

U3 small nucleolar ribonucleoprotein protein IMP4

Chain RH

Ribosomal RNA small subunit methyltransferase NEP1

Chain RN

Nucleolar complex protein 14