3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7D63_005 not in the Motif Atlas
Homologous match to J3_4V88_036
Geometric discrepancy: 0.2741
The information below is about J3_4V88_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.2
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

7D63|1|SA|U|1168
7D63|1|SA|G|1169
7D63|1|SA|G|1170
7D63|1|SA|A|1171
*
7D63|1|SA|U|1468
7D63|1|SA|A|1469
7D63|1|SA|C|1470
*
7D63|1|SA|G|1574
7D63|1|SA|G|1575
7D63|1|SA|A|1576
7D63|1|SA|A|1577

Current chains

Chain SA
18S rRNA

Nearby chains

Chain 5G
U3 small nucleolar ribonucleoprotein protein IMP4
Chain RH
Ribosomal RNA small subunit methyltransferase NEP1
Chain RN
Nucleolar complex protein 14
Chain SU
40S ribosomal protein S19-A

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