3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
CCAG*CUAGUAA*UGAUUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7D63_008 not in the Motif Atlas
Homologous match to J3_8C3A_038
Geometric discrepancy: 0.2522
The information below is about J3_8C3A_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.2
Basepair signature
cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

7D63|1|SA|C|1161
7D63|1|SA|C|1162
7D63|1|SA|A|1163
7D63|1|SA|G|1164
*
7D63|1|SA|C|1581
7D63|1|SA|U|1582
7D63|1|SA|A|1583
7D63|1|SA|G|1584
7D63|1|SA|U|1585
7D63|1|SA|A|1586
7D63|1|SA|A|1587
*
7D63|1|SA|U|1609
7D63|1|SA|G|1610
7D63|1|SA|A|1611
7D63|1|SA|U|1612
7D63|1|SA|U|1613
7D63|1|SA|A|1614
7D63|1|SA|C|1615
7D63|1|SA|G|1616

Current chains

Chain SA
18S rRNA

Nearby chains

Chain 5G
U3 small nucleolar ribonucleoprotein protein IMP4
Chain B1
Periodic tryptophan protein 2
Chain SG
40S ribosomal protein S5
Chain SR
40S ribosomal protein S16-A
Chain Sd
40S ribosomal protein S28-A

Coloring options:


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