J3_7D6Z_018
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7D6Z_018 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0912
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7D6Z|1|f|U|943
7D6Z|1|f|G|944
7D6Z|1|f|G|945
7D6Z|1|f|A|946
*
7D6Z|1|f|U|1235
7D6Z|1|f|A|1236
7D6Z|1|f|C|1237
*
7D6Z|1|f|G|1337
7D6Z|1|f|G|1338
7D6Z|1|f|A|1339
7D6Z|1|f|A|1340
Current chains
- Chain f
- 16S ribosomal rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- Transfer RNA; tRNA
- Chain p
- 30S ribosomal protein S9
- Chain t
- 30S ribosomal protein S13
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