J3_7D6Z_025
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 7D6Z|1|f|U|1240, 7D6Z|1|f|C|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7D6Z_025 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1475
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
7D6Z|1|f|C|1237
7D6Z|1|f|A|1238
7D6Z|1|f|A|1239
7D6Z|1|f|U|1240
7D6Z|1|f|G|1241
*
7D6Z|1|f|C|1296
7D6Z|1|f|G|1297
7D6Z|1|f|U|1298
7D6Z|1|f|A|1299
7D6Z|1|f|G|1300
7D6Z|1|f|U|1301
7D6Z|1|f|C|1302
7D6Z|1|f|C|1303
*
7D6Z|1|f|G|1334
7D6Z|1|f|U|1335
7D6Z|1|f|C|1336
7D6Z|1|f|G|1337
Current chains
- Chain f
- 16S ribosomal rRNA
Nearby chains
- Chain n
- 30S ribosomal protein S7
- Chain t
- 30S ribosomal protein S13
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