J3_7D6Z_026
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 7D6Z|1|A|A|504, 7D6Z|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7D6Z_026 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1299
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7D6Z|1|A|G|30
7D6Z|1|A|C|31
*
7D6Z|1|A|G|474
7D6Z|1|A|C|475
7D6Z|1|A|G|476
7D6Z|1|A|A|477
7D6Z|1|A|A|478
7D6Z|1|A|A|479
7D6Z|1|A|A|480
7D6Z|1|A|G|481
7D6Z|1|A|A|482
7D6Z|1|A|A|483
7D6Z|1|A|C|484
*
7D6Z|1|A|G|496
7D6Z|1|A|A|497
7D6Z|1|A|G|498
7D6Z|1|A|U|499
7D6Z|1|A|G|500
7D6Z|1|A|A|501
7D6Z|1|A|A|502
7D6Z|1|A|A|503
7D6Z|1|A|A|504
7D6Z|1|A|A|505
7D6Z|1|A|G|506
7D6Z|1|A|A|507
7D6Z|1|A|A|508
7D6Z|1|A|C|509
7D6Z|1|A|C|510
Current chains
- Chain A
- 23S ribosomal rRNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
Coloring options: