J3_7D80_004

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7D80_004 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1501

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7D80|1|A|C|698
7D80|1|A|A|699
7D80|1|A|G|700
*
7D80|1|A|C|732
7D80|1|A|G|733
7D80|1|A|A|734
7D80|1|A|A|735
7D80|1|A|C|736
*
7D80|1|A|G|760
7D80|1|A|A|761
7D80|1|A|U|762
7D80|1|A|G|763

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2