J3_7DUJ_015

3D structure

PDB id

7DUJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7DUJ|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7DUJ_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2066

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7DUJ|1|A|C|990
7DUJ|1|A|U|991
7DUJ|1|A|U|992
7DUJ|1|A|G|993
7DUJ|1|A|A|994
7DUJ|1|A|C|995
7DUJ|1|A|A|996
7DUJ|1|A|U|997
*
7DUJ|1|A|A|1044
7DUJ|1|A|C|1045
7DUJ|1|A|A|1046
7DUJ|1|A|G|1047
*
7DUJ|1|A|C|1210
7DUJ|1|A|U|1211
7DUJ|1|A|U|1212
7DUJ|1|A|A|1213
7DUJ|1|A|C|1214
7DUJ|1|A|G|1215

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z