J3_7DUK_004

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7DUK|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7DUK_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.073

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

7DUK|1|A|C|826
7DUK|1|A|U|827
7DUK|1|A|A|828
7DUK|1|A|G|829
*
7DUK|1|A|C|857
7DUK|1|A|G|858
7DUK|1|A|A|859
7DUK|1|A|A|860
7DUK|1|A|G|861
*
7DUK|1|A|C|868
7DUK|1|A|G|869
7DUK|1|A|U|870
7DUK|1|A|U|871
7DUK|1|A|A|872
7DUK|1|A|A|873
7DUK|1|A|G|874

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8