J3_7DUK_013
3D structure
- PDB id
- 7DUK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 7DUK|1|A|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7DUK_013 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.073
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7DUK|1|A|C|586
7DUK|1|A|G|587
7DUK|1|A|G|588
*
7DUK|1|A|C|651
7DUK|1|A|U|652
7DUK|1|A|A|653
7DUK|1|A|G|654
7DUK|1|A|A|655
*
7DUK|1|A|U|751
7DUK|1|A|G|752
7DUK|1|A|A|753
7DUK|1|A|C|754
7DUK|1|A|G|755
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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