J3_7DUK_015

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7DUK|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7DUK_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.199

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7DUK|1|A|C|990
7DUK|1|A|U|991
7DUK|1|A|U|992
7DUK|1|A|G|993
7DUK|1|A|A|994
7DUK|1|A|C|995
7DUK|1|A|A|996
7DUK|1|A|U|997
*
7DUK|1|A|A|1044
7DUK|1|A|C|1045
7DUK|1|A|A|1046
7DUK|1|A|G|1047
*
7DUK|1|A|C|1210
7DUK|1|A|U|1211
7DUK|1|A|U|1212
7DUK|1|A|A|1213
7DUK|1|A|C|1214
7DUK|1|A|G|1215

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z