J3_7F0D_001

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7F0D_001 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0899

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

7F0D|1|A|G|30
7F0D|1|A|C|31
*
7F0D|1|A|G|563
7F0D|1|A|U|564
7F0D|1|A|G|565
7F0D|1|A|A|566
7F0D|1|A|A|567
7F0D|1|A|A|568
7F0D|1|A|A|569
7F0D|1|A|G|570
*
7F0D|1|A|C|597
7F0D|1|A|C|598

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24