J3_7F0D_004

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7F0D_004 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.1235

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7F0D|1|A|C|827
7F0D|1|A|A|828
7F0D|1|A|G|829
*
7F0D|1|A|C|861
7F0D|1|A|G|862
7F0D|1|A|A|863
7F0D|1|A|A|864
7F0D|1|A|C|865
*
7F0D|1|A|G|889
7F0D|1|A|A|890
7F0D|1|A|U|891
7F0D|1|A|G|892

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2