J3_7F0D_006

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7F0D|1|A|A|1844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7F0D_006 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.217

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7F0D|1|A|C|1437
7F0D|1|A|A|1438
7F0D|1|A|A|1439
7F0D|1|A|G|1440
*
7F0D|1|A|C|1840
7F0D|1|A|C|1841
7F0D|1|A|C|1842
7F0D|1|A|A|1843
7F0D|1|A|A|1844
7F0D|1|A|A|1845
7F0D|1|A|C|1846
*
7F0D|1|A|G|1855
7F0D|1|A|U|1856
7F0D|1|A|G|1857

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34