J3_7F0D_007

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7F0D_007 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.2182

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

7F0D|1|A|U|1475
7F0D|1|A|C|1476
7F0D|1|A|G|1477
7F0D|1|A|G|1478
7F0D|1|A|G|1479
7F0D|1|A|A|1480
7F0D|1|A|C|1481
*
7F0D|1|A|G|1512
7F0D|1|A|A|1513
7F0D|1|A|C|1514
7F0D|1|A|A|1515
7F0D|1|A|A|1516
*
7F0D|1|A|U|1533
7F0D|1|A|A|1534

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23