J3_7F0D_010

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

7F0D|1|A|A|2435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7F0D_010 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.149

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7F0D|1|A|U|2328
7F0D|1|A|U|2329
7F0D|1|A|G|2330
*
7F0D|1|A|C|2433
7F0D|1|A|U|2434
7F0D|1|A|A|2435
7F0D|1|A|A|2436
7F0D|1|A|C|2437
*
7F0D|1|A|G|2461
7F0D|1|A|G|2462
7F0D|1|A|A|2463
7F0D|1|A|C|2464
7F0D|1|A|A|2465
7F0D|1|A|G|2466

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28