J3_7JQB_001

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JQB_001 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.084

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

7JQB|1|A|A|40
7JQB|1|A|G|41
*
7JQB|1|A|C|481
7JQB|1|A|G|482
7JQB|1|A|C|483
7JQB|1|A|A|484
7JQB|1|A|A|485
7JQB|1|A|A|486
7JQB|1|A|U|487
*
7JQB|1|A|A|512
7JQB|1|A|G|513
7JQB|1|A|U|514

Current chains

Chain A

rRNA

Nearby chains

Chain K

uS4

Chain c

Uncharacterized protein