J3_7JQB_014
3D structure
- PDB id
- 7JQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 7JQB|1|A|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7JQB_014 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0681
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7JQB|1|A|A|40
7JQB|1|A|G|41
7JQB|1|A|A|42
7JQB|1|A|U|43
7JQB|1|A|U|44
7JQB|1|A|A|45
7JQB|1|A|A|46
7JQB|1|A|G|47
*
7JQB|1|A|C|479
7JQB|1|A|G|480
7JQB|1|A|C|481
7JQB|1|A|G|482
7JQB|1|A|C|483
7JQB|1|A|A|484
7JQB|1|A|A|485
7JQB|1|A|A|486
7JQB|1|A|U|487
*
7JQB|1|A|A|512
7JQB|1|A|G|513
7JQB|1|A|U|514
Current chains
- Chain A
- rRNA
Nearby chains
- Chain K
- uS4
- Chain c
- Uncharacterized protein
Coloring options: