J3_7JQC_009

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7JQC|1|A|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JQC_009 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.1025

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

7JQC|1|A|A|40
7JQC|1|A|G|41
7JQC|1|A|A|42
7JQC|1|A|U|43
7JQC|1|A|U|44
7JQC|1|A|A|45
7JQC|1|A|A|46
7JQC|1|A|G|47
*
7JQC|1|A|C|479
7JQC|1|A|G|480
7JQC|1|A|C|481
7JQC|1|A|G|482
7JQC|1|A|C|483
7JQC|1|A|A|484
7JQC|1|A|A|485
7JQC|1|A|A|486
7JQC|1|A|U|487
*
7JQC|1|A|A|512
7JQC|1|A|G|513
7JQC|1|A|U|514

Current chains

Chain A

rRNA

Nearby chains

Chain K

uS4

Chain c

Uncharacterized protein