J3_7JQL_053

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

7JQL|1|2a|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JQL_053 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.0873

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7JQL|1|2a|C|1237
7JQL|1|2a|A|1238
7JQL|1|2a|A|1239
7JQL|1|2a|U|1240
7JQL|1|2a|G|1241
*
7JQL|1|2a|C|1296
7JQL|1|2a|C|1297
7JQL|1|2a|C|1298
7JQL|1|2a|A|1299
7JQL|1|2a|G|1300
7JQL|1|2a|U|1301
7JQL|1|2a|U|1302
7JQL|1|2a|C|1303
*
7JQL|1|2a|G|1334
7JQL|1|2a|C|1335
7JQL|1|2a|C|1336
7JQL|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx