J3_7JQL_065
3D structure
- PDB id
- 7JQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7JQL|1|2A|U|448, 7JQL|1|2A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7JQL_065 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0973
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7JQL|1|2A|C|32
7JQL|1|2A|U|33
7JQL|1|2A|C|34
7JQL|1|2A|G|35
*
7JQL|1|2A|C|445
7JQL|1|2A|G|446
7JQL|1|2A|A|447
7JQL|1|2A|U|448
7JQL|1|2A|A|449
7JQL|1|2A|G|450
7JQL|1|2A|C|451
7JQL|1|2A|G|452
7JQL|1|2A|C|453
7JQL|1|2A|A|454
7JQL|1|2A|C|455
7JQL|1|2A|C|456
7JQL|1|2A|A|457
7JQL|1|2A|G|458
7JQL|1|2A|U|459
7JQL|1|2A|A|460
7JQL|1|2A|C|461
*
7JQL|1|2A|G|468
7JQL|1|2A|G|469
7JQL|1|2A|A|470
7JQL|1|2A|A|471
7JQL|1|2A|A|472
7JQL|1|2A|G|473
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 27
- 50S ribosomal protein L34
- Chain 2F
- 50S ribosomal protein L4
- Chain 2U
- 50S ribosomal protein L20
- Chain 2X
- 50S ribosomal protein L23
Coloring options: