J3_7JQM_060

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7JQM|1|1a|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JQM_060 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1623

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7JQM|1|1a|C|990
7JQM|1|1a|U|991
7JQM|1|1a|U|992
7JQM|1|1a|G|993
7JQM|1|1a|A|994
7JQM|1|1a|C|995
7JQM|1|1a|A|996
7JQM|1|1a|U|997
*
7JQM|1|1a|A|1044
7JQM|1|1a|C|1045
7JQM|1|1a|A|1046
7JQM|1|1a|G|1047
*
7JQM|1|1a|C|1210
7JQM|1|1a|U|1211
7JQM|1|1a|U|1212
7JQM|1|1a|A|1213
7JQM|1|1a|C|1214
7JQM|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z