3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
7JSS|1|1|C|1607, 7JSS|1|1|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7JSS_007 not in the Motif Atlas
Homologous match to J3_7A0S_007
Geometric discrepancy: 0.3711
The information below is about J3_7A0S_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_71677.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

7JSS|1|1|C|1306
7JSS|1|1|A|1307
7JSS|1|1|A|1308
7JSS|1|1|G|1309
*
7JSS|1|1|C|1605
7JSS|1|1|C|1606
7JSS|1|1|C|1607
7JSS|1|1|A|1608
7JSS|1|1|A|1609
7JSS|1|1|A|1610
7JSS|1|1|C|1611
*
7JSS|1|1|G|1620
7JSS|1|1|U|1621
7JSS|1|1|G|1622

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3657 s