J3_7JSW_011

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7JSW|1|1|A|2518, 7JSW|1|1|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JSW_011 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1475

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7JSW|1|1|C|2517
7JSW|1|1|A|2518
7JSW|1|1|U|2519
7JSW|1|1|C|2520
*
7JSW|1|1|G|2545
7JSW|1|1|U|2546
7JSW|1|1|A|2547
*
7JSW|1|1|U|2561
7JSW|1|1|U|2562
7JSW|1|1|U|2563
7JSW|1|1|A|2564
7JSW|1|1|A|2565
7JSW|1|1|A|2566
7JSW|1|1|G|2567

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L14