J3_7JSW_030

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JSW_030 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.5338

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

7JSW|1|1|U|1344
7JSW|1|1|C|1345
7JSW|1|1|G|1346
7JSW|1|1|A|1347
7JSW|1|1|C|1348
7JSW|1|1|C|1349
7JSW|1|1|C|1350
*
7JSW|1|1|G|1381
7JSW|1|1|G|1382
7JSW|1|1|A|1383
7JSW|1|1|A|1384
7JSW|1|1|A|1385
*
7JSW|1|1|U|1402
7JSW|1|1|A|1403

Current chains

Chain 1

23S ribosomal RNA

Nearby chains