J3_7JSZ_007

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7JSZ|1|1|C|1607, 7JSZ|1|1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JSZ_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.3778

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7JSZ|1|1|C|1306
7JSZ|1|1|A|1307
7JSZ|1|1|A|1308
7JSZ|1|1|G|1309
*
7JSZ|1|1|C|1605
7JSZ|1|1|C|1606
7JSZ|1|1|C|1607
7JSZ|1|1|A|1608
7JSZ|1|1|A|1609
7JSZ|1|1|A|1610
7JSZ|1|1|C|1611
*
7JSZ|1|1|G|1620
7JSZ|1|1|U|1621
7JSZ|1|1|G|1622

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34