3D structure

PDB id
7JT2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome stalled on long mRNA with ArfB bound in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7JT2_006 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.1292
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

7JT2|1|1|C|1298
7JT2|1|1|G|1299
7JT2|1|1|G|1300
7JT2|1|1|A|1301
7JT2|1|1|A|1302
7JT2|1|1|G|1303
*
7JT2|1|1|C|1625
7JT2|1|1|A|1626
7JT2|1|1|G|1627
*
7JT2|1|1|C|1639
7JT2|1|1|A|1640
7JT2|1|1|A|1641
7JT2|1|1|G|1642

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3947 s
Application loaded.