J3_7JT2_030

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JT2_030 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0933

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7JT2|1|1|G|1424
7JT2|1|1|G|1425
7JT2|1|1|G|1426
7JT2|1|1|A|1427
7JT2|1|1|C|1428
7JT2|1|1|G|1429
*
7JT2|1|1|C|1564
7JT2|1|1|C|1565
*
7JT2|1|1|G|1568
7JT2|1|1|A|1569
7JT2|1|1|A|1570
7JT2|1|1|A|1571
7JT2|1|1|A|1572
7JT2|1|1|G|1573
7JT2|1|1|C|1574

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2