3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
7JT3|1|1|U|686, 7JT3|1|1|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7JT3_003 not in the Motif Atlas
Homologous match to J3_7RQB_004
Geometric discrepancy: 0.2223
The information below is about J3_7RQB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.4
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

7JT3|1|1|U|683
7JT3|1|1|G|684
7JT3|1|1|A|685
7JT3|1|1|U|686
7JT3|1|1|C|687
7JT3|1|1|U|688
7JT3|1|1|A|689
*
7JT3|1|1|U|773
7JT3|1|1|G|774
7JT3|1|1|G|775
*
7JT3|1|1|C|791
7JT3|1|1|A|792
7JT3|1|1|A|793
7JT3|1|1|A|794

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L34
Chain b
50S ribosomal protein L2
Chain d
50S ribosomal protein L4

Coloring options:


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